Basic Information
Gene ID
orange1.1g041602m.g.v1.1
Position
scaffold00003:1970426-1971518 (-)
1092bp
Gene Type
gene
Gene Description (Protein Product)
Zinc knuckle
Organism
Also AS AT4G31580CICLE_v10032693mg

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g043443m.g.v1.1 Serine arginine-rich SC35-like splicing factor SCL30
orange1.1g046599m.g.v1.1 serine arginine-rich splicing factor
orange1.1g045807m.g.v1.1 Splicing factor U2af small subunit
Regulatory gene
orange1.1g003684m.g.v1.1 FRIGIDA-like protein
orange1.1g005229m.g.v1.1 FRIGIDA-like protein
orange1.1g005737m.g.v1.1 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.