Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
orange1.1g044590m.g.v1.1
View in Genome Browser
Position
scaffold00070:25452-27145 (-)
1693bp
Gene Type
gene
Gene Description (Protein Product)
zinc transporter
Organism
Citrus sinensis
Also AS AT1G55910CICLE_v10010292mg

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g046055m.g.v1.1 Belongs to the protein kinase superfamily. Ser Thr protein kinase family
orange1.1g045471m.g.v1.1 Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips; a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion
orange1.1g044927m.g.v1.1 ABC transporter C family member
Regulatory gene
orange1.1g018368m.g.v1.1 Protein BASIC PENTACYSTEINE6-like
orange1.1g021524m.g.v1.1 Protein BASIC PENTACYSTEINE4-like
orange1.1g022806m.g.v1.1 Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000041 transition metal ion transport BP
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005385 zinc ion transmembrane transporter activity MF
GO:0005575 cellular_component CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006829 zinc ion transport BP
GO:0008150 biological_process BP
GO:0008324 monoatomic cation transmembrane transporter activity MF
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0016020 membrane CC
GO:0022857 transmembrane transporter activity MF
GO:0022890 inorganic cation transmembrane transporter activity MF
GO:0030001 metal ion transport BP
GO:0034220 monoatomic ion transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0046915 transition metal ion transmembrane transporter activity MF
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0055085 transmembrane transport BP
GO:0070838 metal ion transport BP
GO:0071577 zinc ion transmembrane transport BP
GO:0072509 inorganic cation transmembrane transporter activity MF
GO:0072511 inorganic cation transmembrane transport BP
GO:0098655 monoatomic cation transmembrane transport BP
GO:0098660 inorganic ion transmembrane transport BP
GO:0098662 inorganic cation transmembrane transport BP