Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
orange1.1g045556m.g.v1.1
View in Genome Browser
Position
scaffold00005:2529800-2530605 (+)
805bp
Gene Type
gene
Gene Description (Protein Product)
RNA polymerase Rpb2; domain 6
Organism
Citrus sinensis
Also AS ATCG00190

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g046825m.g.v1.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
orange1.1g046522m.g.v1.1 May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter; which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex
orange1.1g048794m.g.v1.1 Pentatricopeptide repeat-containing protein
Regulatory gene
orange1.1g000304m.g.v1.1 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains
orange1.1g001409m.g.v1.1 Myb-like protein L
orange1.1g004963m.g.v1.1 WRKY Transcription Factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0030880 RNA polymerase complex CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
KEGG Term Name Description
map03020 RNA polymerase -