Basic Information
Gene ID
orange1.1g047508m.g.v1.1
Position
scaffold00141:190760-192225 (-)
1465bp
Gene Type
gene
Gene Description (Protein Product)
U4 U6 small nuclear ribonucleoprotein
Organism
Also AS AT1G60170CICLE_v10031363mg

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g048746m.g.v1.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase
orange1.1g048066m.g.v1.1 ribosome biogenesis protein
orange1.1g048750m.g.v1.1 Zinc finger CCCH domain-containing protein
Regulatory gene
orange1.1g000304m.g.v1.1 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains
orange1.1g001099m.g.v1.1 Protein ALWAYS EARLY
orange1.1g001409m.g.v1.1 Myb-like protein L

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.