Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
orange1.1g047608m.g.v1.1
View in Genome Browser
Position
scaffold00002:5061583-5064666 (+)
3083bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the histone deacetylase family. HD Type 1 subfamily
Organism
Citrus sinensis
Also AS AT4G38130CICLE_v10003113mg

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g047769m.g.v1.1 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin; limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation; DNA repair; DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones; also called histone code; and nucleosome remodeling
orange1.1g047830m.g.v1.1 Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)
orange1.1g048306m.g.v1.1 chromodomain-helicase-DNA-binding protein 1-like
Regulatory gene
orange1.1g005737m.g.v1.1 AP2-like ethylene-responsive transcription factor
orange1.1g009943m.g.v1.1 Floral homeotic protein APETALA 2
orange1.1g010039m.g.v1.1 AP2-like ethylene-responsive transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)