PPGR - Gene Detail

Basic Information

Gene ID	orange1.1g047757m.g.v1.1 View in Genome Browser
Position	scaffold00039:348916-351965 (+) 3049bp
Gene Type	gene
Gene Description (Protein Product)	structural constituent of cytoskeleton
Organism	Citrus sinensis
Also AS	AT5G12250CICLE_v10011719mg

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

orange1.1g048350m.g.v1.1 Ubiquitin exists either covalently attached to another protein; or free (unanchored). When covalently bound; it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin); a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains; when attached to a target protein; have different functions depending on the Lys residue of the ubiquitin that is linked

orange1.1g048571m.g.v1.1 belongs to the protein kinase superfamily

orange1.1g048118m.g.v1.1 Guanine nucleotide-binding protein subunit beta-like protein

Regulatory gene

orange1.1g018368m.g.v1.1 Protein BASIC PENTACYSTEINE6-like

orange1.1g021524m.g.v1.1 Protein BASIC PENTACYSTEINE4-like

orange1.1g022806m.g.v1.1 Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005198	structural molecule activity	MF
GO:0005200	structural constituent of cytoskeleton	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005856	cytoskeleton	CC
GO:0005886	plasma membrane	CC
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0008150	biological_process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009409	response to cold	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0009987	cellular process	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
map03020	RNA polymerase	-