PPGR - Gene Detail

Basic Information

Gene ID	evm.TU.Chr14.1577 View in Genome Browser
Position	Chr14:32430466-32441798 (+) 11332bp
Gene Type	gene
Gene Description (Protein Product)	mediator of RNA polymerase II transcription subunit
Organism	Diospyros oleifera Cheng
Also AS	AT1G16430

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

evm.TU.Chr7.54 Two-component response regulator-like

evm.TU.Chr7.54 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery

evm.TU.Chr14.525 mediator of RNA polymerase II transcription subunit

Regulatory gene

evm.TU.Chr12.68 Protein BASIC PENTACYSTEINE2-like

evm.TU.Chr14.1632 Protein BASIC PENTACYSTEINE4-like

evm.TU.Chr4.807 Glutamate-gated receptor that probably acts as non- selective cation channel

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0016592	mediator complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0070013	intracellular organelle lumen	CC