Basic Information
Gene ID
evm.TU.Chr3.1921
Position
Chr3:41645205-41650937 (-)
5732bp
Gene Type
gene
Gene Description (Protein Product)
splicing factor
Organism
Also AS AT3G61860

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
evm.model.BG.22.p U11 U12 small nuclear ribonucleoprotein 35 kDa
evm.TU.Chr7.1714 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
evm.TU.Chr7.1714 serine arginine-rich splicing factor
Regulatory gene
evm.TU.Chr12.1052 7-deoxyloganetic acid glucosyltransferase-like
evm.TU.Chr12.2340 dof zinc finger protein
evm.TU.Chr12.68 Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.