PPGR - Gene Detail

Basic Information

Gene ID	evm.TU.Chr6.1948 View in Genome Browser
Position	Chr6:40215359-40216163 (+) 804bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the heat shock protein 70 family
Organism	Diospyros oleifera Cheng
Also AS	AT5G09590

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

evm.TU.Chr8.1509 serine threonine-protein kinase

evm.TU.Chr8.1509 GDP-mannose 4,6 dehydratase

evm.model.BG.199.p Belongs to the AAA ATPase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009408	response to heat	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009615	response to virus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0016020	membrane	CC
GO:0017076	purine nucleotide binding	MF
GO:0030312	external encapsulating structure	CC
GO:0030554	adenyl nucleotide binding	MF
GO:0031090	organelle membrane	CC
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046686	response to cadmium ion	BP
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0071944	cell periphery	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF

KEGG Term	Name	Description
map03018	RNA degradation	The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.