PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	evm.TU.Chr1.1112 View in Genome Browser
Position	GWHBISF00000485:32523459-32523862 (+) 403bp
Gene Type	gene
Gene Description (Protein Product)	structural constituent of ribosome
Organism	Eucommia ulmoides
Also AS	AT4G15000

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	evm.TU.Chr12.1047 structural constituent of ribosome evm.TU.Chr12.1047 Signal peptidase, peptidase S26 evm.TU.Chr10.112 structural constituent of ribosome
Regulatory gene	evm.TU.Chr1.1505 Belongs to the MIP aquaporin (TC 1.A.8) family evm.TU.Chr1.1716 Eukaryotic translation initiation factor evm.TU.Chr1.1794 Myb-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	BP
GO:0000956	nuclear-transcribed mRNA catabolic process	BP
GO:0002181	cytoplasmic translation	BP
GO:0002262	myeloid cell homeostasis	BP
GO:0002376	immune system process	BP
GO:0002520	immune system development	BP
GO:0003674	molecular_function	MF
GO:0003735	structural constituent of ribosome	MF
GO:0005198	structural molecule activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0005791	rough endoplasmic reticulum	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006401	RNA catabolic process	BP
GO:0006402	mRNA catabolic process	BP
GO:0006412	translation	BP
GO:0006413	translational initiation	BP
GO:0006518	peptide metabolic process	BP
GO:0006605	protein targeting	BP
GO:0006612	protein targeting to membrane	BP
GO:0006613	cotranslational protein targeting to membrane	BP
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0007275	multicellular organism development	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0012505	endomembrane system	CC
GO:0014070	response to organic cyclic compound	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015934	large ribosomal subunit	CC
GO:0016020	membrane	CC
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022625	cytosolic large ribosomal subunit	CC
GO:0022626	cytosolic ribosome	CC
GO:0030097	hemopoiesis	BP
GO:0030099	myeloid cell differentiation	BP
GO:0030154	cell differentiation	BP
GO:0030218	erythrocyte differentiation	BP
GO:0030684	preribosome	CC
GO:0030687	preribosome, large subunit precursor	CC
GO:0030867	rough endoplasmic reticulum membrane	CC
GO:0031090	organelle membrane	CC
GO:0031960	response to corticosteroid	BP
GO:0031984	organelle subcompartment	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033365	protein localization to organelle	BP
GO:0033993	response to lipid	BP
GO:0034101	erythrocyte homeostasis	BP
GO:0034470	ncRNA processing	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042221	response to chemical	BP
GO:0042254	ribosome biogenesis	BP
GO:0042592	homeostatic process	BP
GO:0042886	amide transport	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045047	protein targeting to ER	BP
GO:0045184	establishment of protein localization	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046907	intracellular transport	BP
GO:0048513	animal organ development	BP
GO:0048519	negative regulation of biological process	BP
GO:0048534	hematopoietic or lymphoid organ development	BP
GO:0048545	response to steroid hormone	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0048872	homeostasis of number of cells	BP
GO:0050789	regulation of biological process	BP
GO:0050896	response to stimulus	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051385	response to mineralocorticoid	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:0072657	protein localization to membrane	BP
GO:0090150	establishment of protein localization to membrane	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097305	response to alcohol	BP
GO:0098552	side of membrane	CC
GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	CC
GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	CC
GO:0098562	cytoplasmic side of membrane	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901654	response to ketone	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1904044	response to aldosterone	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03010	Ribosome	-
map01100	Metabolic pathways	-
map00563	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	Cell surface proteins can be attached to the cell membrane via the glycolipid structure called glycosylphosphatidylinositol (GPI) anchor. Hundreds of GPI-anchored proteins have been identified in many eukaryotes ranging from protozoa and fungi to mammals. All protein-linked GPI anchors share a common core structure, characterized by the substructure Man (a1-4) GlcN (a1-6) myo-inositol-1P-lipid. Biosynthesis of GPI anchors proceeds in three stages: (i) preassembly of a GPI precursor in the ER membrane, (ii) attachment of the GPI to the C-terminus of a newly synthesized protein in the lumen of the ER, and (iii) lipid remodeling and/or carbohydrate side-chain modifications in the ER and the Golgi. Defects of GPI anchor biosynthesis gene result in a genetic disorder, paroxysmal nocturnal hemoglobinuria.