Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
evm.TU.Chr16.1933
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Position
GWHBISF00000495:48062409-48069212 (-)
6803bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin carboxyl-terminal hydrolase
Organism
Eucommia ulmoides
Also AS AT5G10790

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
evm.TU.F000124F.11 Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex; participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators; where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery
evm.TU.Chr6.401 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription
evm.TU.Chr6.401 E3 ubiquitin ligase BIG
Regulatory gene
evm.TU.Chr13.1842 dof zinc finger protein
evm.TU.Chr16.2061 Dof zinc finger protein
evm.TU.Chr7.1542 ABC transporter B family member 29

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)