PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	FSB0131999 View in Genome Browser
Position	scaffold326_size272655:141620-143731 (-) 2111bp
Gene Type	gene
Gene Description (Protein Product)	TBP-domain-containing protein
Organism	Fagus sylvatica
Also AS	AT3G13445

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	FSB0155340 Transcription initiation factor IIA large FSB0160167 Transcription initiation factor TFIID subunit FSB0160434 Transcription initiation factor TFIID subunit
Regulatory gene	FSB0100633 Protein BASIC PENTACYSTEINE6-like FSB0101557 B3 domain-containing transcription factor FSB0104766 B3 domain-containing transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000120	RNA polymerase I transcription regulator complex	CC
GO:0000126	transcription factor TFIIIB complex	CC
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0000976	transcription cis-regulatory region binding	MF
GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	MF
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	MF
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	MF
GO:0000983	RNA polymerase II general transcription initiation factor activity	MF
GO:0000988	obsolete transcription factor activity, protein binding	MF
GO:0000989	obsolete transcription factor activity, transcription factor binding	MF
GO:0000992	RNA polymerase III cis-regulatory region sequence-specific DNA binding	MF
GO:0001006	RNA polymerase III type 3 promoter sequence-specific DNA binding	MF
GO:0001012	RNA polymerase II transcription regulatory region sequence-specific DNA binding	MF
GO:0001016	RNA polymerase III transcription regulatory region sequence-specific DNA binding	MF
GO:0001032	RNA polymerase III type 3 promoter sequence-specific DNA binding	MF
GO:0001046	core promoter sequence-specific DNA binding	MF
GO:0001047	core promoter sequence-specific DNA binding	MF
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0001075	RNA polymerase II general transcription initiation factor activity	MF
GO:0001085	RNA polymerase II-specific DNA-binding transcription factor binding	MF
GO:0001102	RNA polymerase II-specific DNA-binding transcription factor binding	MF
GO:0001134	obsolete transcription regulator recruiting activity	MF
GO:0001167	obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding	MF
GO:0001169	obsolete transcription factor activity, RNA polymerase I CORE element sequence-specific binding	MF
GO:0001179	RNA polymerase I general transcription initiation factor binding	MF
GO:0001186	obsolete RNA polymerase I transcription regulator recruiting activity	MF
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003682	chromatin binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005667	transcription regulator complex	CC
GO:0005669	transcription factor TFIID complex	CC
GO:0005730	nucleolus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006351	DNA-templated transcription	BP
GO:0006352	DNA-templated transcription initiation	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006356	regulation of transcription by RNA polymerase I	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006360	transcription by RNA polymerase I	BP
GO:0006361	transcription initiation at RNA polymerase I promoter	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006367	transcription initiation at RNA polymerase II promoter	BP
GO:0006383	transcription by RNA polymerase III	BP
GO:0006384	transcription initiation at RNA polymerase III promoter	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008301	DNA binding, bending	MF
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009303	rRNA transcription	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0015074	DNA integration	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016591	RNA polymerase II, holoenzyme	CC
GO:0018130	heterocycle biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0022607	cellular component assembly	BP
GO:0030880	RNA polymerase complex	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032196	transposition	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032991	protein-containing complex	CC
GO:0033613	DNA-binding transcription factor binding	MF
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042790	nucleolar large rRNA transcription by RNA polymerase I	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043565	sequence-specific DNA binding	MF
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044212	transcription cis-regulatory region binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044452	obsolete nucleolar part	CC
GO:0044464	obsolete cell part	CC
GO:0044798	transcription regulator complex	CC
GO:0046483	heterocycle metabolic process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051123	RNA polymerase II preinitiation complex assembly	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065003	protein-containing complex assembly	BP
GO:0065004	protein-DNA complex assembly	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070893	obsolete transposon integration	BP
GO:0070897	transcription preinitiation complex assembly	BP
GO:0070898	RNA polymerase III preinitiation complex assembly	BP
GO:0071704	organic substance metabolic process	BP
GO:0071824	protein-DNA complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090575	RNA polymerase II transcription regulator complex	CC
GO:0090576	RNA polymerase III transcription regulator complex	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0098781	ncRNA transcription	BP
GO:0140110	transcription regulator activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP
GO:1902494	catalytic complex	CC
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1990234	transferase complex	CC
GO:1990837	sequence-specific double-stranded DNA binding	MF
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map03022	Basal transcription factors	-