PPGR - Gene Detail

Gene ID	FSB0145479 View in Genome Browser
Position	scaffold504_size218930:3286-5350 (+) 2064bp
Gene Type	gene
Gene Description (Protein Product)	ABC transporter G family member
Organism	Fagus sylvatica
Also AS	AT1G53270

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	FSB0147804 cyclic nucleotide-gated ion channel FSB0154232 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region FSB0154064 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Regulatory gene	FSB0100008 NAC domain-containing protein FSB0100026 (NAC) domain-containing protein FSB0100191 NAC domain-containing protein

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005215	transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0008150	biological_process	BP
GO:0015399	primary active transmembrane transporter activity	MF
GO:0015405	ATPase-coupled transmembrane transporter activity	MF
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0022804	active transmembrane transporter activity	MF
GO:0022857	transmembrane transporter activity	MF
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0042623	ATP hydrolysis activity	MF
GO:0042626	ATPase-coupled transmembrane transporter activity	MF
GO:0043492	ATPase-coupled transmembrane transporter activity	MF
GO:0044425	obsolete membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055085	transmembrane transport	BP
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map02010	ABC transporters	The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).