Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FSB0158974
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Position
scaffold872_size156920:144518-147871 (-)
3353bp
Gene Type
gene
Gene Description (Protein Product)
Ribose-5-phosphate isomerase
Organism
Fagus sylvatica
Also AS

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FSB0159892 Phosphoribulokinase
FSB0160830 Belongs to the hexokinase family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000302 response to reactive oxygen species BP
GO:0001306 obsolete age-dependent response to oxidative stress BP
GO:0001315 obsolete age-dependent response to reactive oxygen species BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004751 ribose-5-phosphate isomerase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005975 carbohydrate metabolic process BP
GO:0005996 monosaccharide metabolic process BP
GO:0006014 D-ribose metabolic process BP
GO:0006081 cellular aldehyde metabolic process BP
GO:0006098 pentose-phosphate shunt BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006733 obsolete oxidoreduction coenzyme metabolic process BP
GO:0006739 NADP metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006766 vitamin metabolic process BP
GO:0006767 water-soluble vitamin metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0007568 aging BP
GO:0007571 obsolete age-dependent general metabolic decline BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008614 pyridoxine metabolic process BP
GO:0008615 pyridoxine biosynthetic process BP
GO:0009052 pentose-phosphate shunt, non-oxidative branch BP
GO:0009058 biosynthetic process BP
GO:0009110 vitamin biosynthetic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009987 cellular process BP
GO:0016853 isomerase activity MF
GO:0016860 intramolecular oxidoreductase activity MF
GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses MF
GO:0017144 xenobiotic metabolic process BP
GO:0018130 heterocycle biosynthetic process BP
GO:0019321 pentose metabolic process BP
GO:0019362 pyridine nucleotide metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019682 glyceraldehyde-3-phosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0030246 carbohydrate binding MF
GO:0032502 developmental process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036094 small molecule binding MF
GO:0042221 response to chemical BP
GO:0042364 water-soluble vitamin biosynthetic process BP
GO:0042802 identical protein binding MF
GO:0042816 vitamin B6 metabolic process BP
GO:0042819 vitamin B6 biosynthetic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046496 nicotinamide nucleotide metabolic process BP
GO:0048029 monosaccharide binding MF
GO:0050896 response to stimulus BP
GO:0051156 glucose 6-phosphate metabolic process BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0072524 pyridine-containing compound metabolic process BP
GO:0072525 pyridine-containing compound biosynthetic process BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901615 organic hydroxy compound metabolic process BP
GO:1901617 organic hydroxy compound biosynthetic process BP
GO:1901700 response to oxygen-containing compound BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map00710 Carbon fixation in photosynthetic organisms -
map00520 Amino sugar and nucleotide sugar metabolism -
map00250 Alanine, aspartate and glutamate metabolism -
map00030 Pentose phosphate pathway The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].