PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	FSB0161941 View in Genome Browser
Position	scaffold9_size857072:306214-309791 (+) 3577bp
Gene Type	gene
Gene Description (Protein Product)	chorismate mutase
Organism	Fagus sylvatica
Also AS	AT1G69370

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000162	tryptophan biosynthetic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004106	chorismate mutase activity	MF
GO:0004601	peroxidase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006568	tryptophan metabolic process	BP
GO:0006576	biogenic amine metabolic process	BP
GO:0006586	indolalkylamine metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008652	amino acid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009072	aromatic amino acid metabolic process	BP
GO:0009073	aromatic amino acid family biosynthetic process	BP
GO:0009308	amine metabolic process	BP
GO:0009309	amine biosynthetic process	BP
GO:0009536	plastid	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009636	response to toxic substance	BP
GO:0009987	cellular process	BP
GO:0016053	organic acid biosynthetic process	BP
GO:0016209	antioxidant activity	MF
GO:0016491	oxidoreductase activity	MF
GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	MF
GO:0016688	L-ascorbate peroxidase activity	MF
GO:0016853	isomerase activity	MF
GO:0016866	intramolecular transferase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042221	response to chemical	BP
GO:0042401	biogenic amine biosynthetic process	BP
GO:0042430	indole-containing compound metabolic process	BP
GO:0042435	indole-containing compound biosynthetic process	BP
GO:0042742	defense response to bacterium	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044106	amine metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046219	indolalkylamine biosynthetic process	BP
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051716	cellular response to stimulus	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0097237	cellular response to toxic substance	BP
GO:0098542	defense response to other organism	BP
GO:0098754	detoxification	BP
GO:0098869	cellular oxidant detoxification	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1901607	alpha-amino acid biosynthetic process	BP
GO:1990748	cellular detoxification	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00400	Phenylalanine, tyrosine and tryptophan biosynthesis	-