PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	FRAEX38873_v2_000085860 View in Genome Browser
Position	Contig1928:142331-144025 (-) 1694bp
Gene Type	gene
Gene Description (Protein Product)	"The light-harvesting complex (LHC) functions as a light receptor
Organism	Fraxinus excelsior
Also AS	AT3G47470

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

FRAEX38873_v2_000090980 The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

FRAEX38873_v2_000374100 Photosystem I reaction center subunit III

FRAEX38873_v2_000213030 The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Regulatory gene

FRAEX38873_v2_000004990 Mini zinc finger protein

FRAEX38873_v2_000008150 Dof zinc finger protein

FRAEX38873_v2_000013920 Zinc-finger homeodomain protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00196	Photosynthesis - antenna proteins	The chlorophyll-binding subunits of photosystems I and II are internal antenna light-harvesting proteins of oxygenic photosynthesis. The antenna proteins that exist in phycobilisomes in cyanobacteria and light-harvesting chlorophyll protein complexes in green plants act as peripheral antenna systems, enabling more efficient absorption of light energy.