Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000167260
View in Genome Browser
Position
Contig3086:36046-41269 (+)
5223bp
Gene Type
gene
Gene Description (Protein Product)
acyl-CoA synthetase 2
Organism
Fraxinus excelsior
Also AS AT1G49430

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000285170 Acyl-CoA synthetase
FRAEX38873_v2_000268670 Plays an essential role in chain termination during de novo fatty acid synthesis
FRAEX38873_v2_000295410 Plays an essential role in chain termination during de novo fatty acid synthesis
Regulatory gene
FRAEX38873_v2_000000110 GAGA binding protein-like family
FRAEX38873_v2_000001190 Stress-associated protein
FRAEX38873_v2_000001740 (NAC) domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001676 long-chain fatty acid metabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004467 long-chain fatty acid-CoA ligase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005911 cell-cell junction CC
GO:0006082 organic acid metabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006631 fatty acid metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009506 plasmodesma CC
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009620 response to fungus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009791 post-embryonic development BP
GO:0009987 cellular process BP
GO:0010015 root morphogenesis BP
GO:0010101 post-embryonic root morphogenesis BP
GO:0010102 lateral root morphogenesis BP
GO:0010143 cutin biosynthetic process BP
GO:0010311 lateral root formation BP
GO:0012505 endomembrane system CC
GO:0015645 fatty acid ligase activity MF
GO:0016405 CoA-ligase activity MF
GO:0016874 ligase activity MF
GO:0016877 ligase activity, forming carbon-sulfur bonds MF
GO:0016878 acid-thiol ligase activity MF
GO:0019752 carboxylic acid metabolic process BP
GO:0022622 root system development BP
GO:0030054 cell junction CC
GO:0031957 very long-chain fatty acid-CoA ligase activity MF
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0048364 root development BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050832 defense response to fungus BP
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0055044 symplast CC
GO:0071704 organic substance metabolic process BP
GO:0090696 post-embryonic plant organ development BP
GO:0090697 post-embryonic plant organ morphogenesis BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0098542 defense response to other organism BP
GO:0099402 plant organ development BP
GO:1901576 organic substance biosynthetic process BP
GO:1905392 plant organ morphogenesis BP
GO:1905393 plant organ formation BP
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
map01100 Metabolic pathways -
map00071 Fatty acid metabolism -
map00061 Fatty acid biosynthesis -