Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000197530
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Position
Contig3622:78247-85473 (-)
7226bp
Gene Type
gene
Gene Description (Protein Product)
Prenyltransferase and squalene oxidase repeat
Organism
Fraxinus excelsior
Also AS AT2G39550

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000254410 small GTPase mediated signal transduction
FRAEX38873_v2_000254410 Belongs to the small GTPase superfamily. Rho family
FRAEX38873_v2_000199930 Belongs to the small GTPase superfamily. Rho family
Regulatory gene
FRAEX38873_v2_000006340 Transcription factor
FRAEX38873_v2_000007570 AP2-like ethylene-responsive transcription factor
FRAEX38873_v2_000008150 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004659 prenyltransferase activity MF
GO:0004661 protein geranylgeranyltransferase activity MF
GO:0004662 CAAX-protein geranylgeranyltransferase activity MF
GO:0004663 Rab geranylgeranyltransferase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005953 CAAX-protein geranylgeranyltransferase complex CC
GO:0005968 Rab-protein geranylgeranyltransferase complex CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0008284 positive regulation of cell population proliferation BP
GO:0008318 protein prenyltransferase activity MF
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009555 pollen development BP
GO:0009628 response to abiotic stimulus BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009737 response to abscisic acid BP
GO:0009787 regulation of abscisic acid-activated signaling pathway BP
GO:0009788 negative regulation of abscisic acid-activated signaling pathway BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0016740 transferase activity MF
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups MF
GO:0018342 protein prenylation BP
GO:0018344 protein geranylgeranylation BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0022622 root system development BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0033993 response to lipid BP
GO:0034097 response to cytokine BP
GO:0036211 protein modification process BP
GO:0042127 regulation of cell population proliferation BP
GO:0042221 response to chemical BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045787 positive regulation of cell cycle BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048229 gametophyte development BP
GO:0048364 root development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0051769 regulation of nitric-oxide synthase biosynthetic process BP
GO:0051771 negative regulation of nitric-oxide synthase biosynthetic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0097305 response to alcohol BP
GO:0097354 prenylation BP
GO:0099402 plant organ development BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901419 regulation of response to alcohol BP
GO:1901420 negative regulation of response to alcohol BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1902494 catalytic complex CC
GO:1905957 regulation of cellular response to alcohol BP
GO:1905958 negative regulation of cellular response to alcohol BP
GO:1990234 transferase complex CC