Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000211590
View in Genome Browser
Position
Contig3889:24451-28560 (+)
4109bp
Gene Type
gene
Gene Description (Protein Product)
Inorganic pyrophosphatase
Organism
Fraxinus excelsior
Also AS AT5G09650

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000358640 ATP synthase delta chain, chloroplastic
FRAEX38873_v2_000389190 ATP synthase delta (OSCP) subunit
FRAEX38873_v2_000400400 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Regulatory gene
FRAEX38873_v2_000000040 Transcription factor
FRAEX38873_v2_000001820 HD-ZIP protein N terminus
FRAEX38873_v2_000006380 Homeobox-leucine zipper protein ATHB-6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004427 inorganic diphosphate phosphatase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006970 response to osmotic stress BP
GO:0008150 biological_process BP
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009941 chloroplast envelope CC
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010876 lipid localization BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0019915 lipid storage BP
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0033036 macromolecule localization BP
GO:0042221 response to chemical BP
GO:0042742 defense response to bacterium BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046686 response to cadmium ion BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051235 maintenance of location BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0098542 defense response to other organism BP
KEGG Term Name Description
map00190 Oxidative phosphorylation -