Basic Information
Gene ID
FRAEX38873_v2_000234790
Position
Contig440:121949-126725 (-)
4776bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS AT5G64270

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000269090 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
FRAEX38873_v2_000357600 pre-mRNA-splicing factor SPF27 homolog
FRAEX38873_v2_000297370 Pre-mRNA-splicing factor of RES complex
Regulatory gene
FRAEX38873_v2_000006700 MYB-CC type transfactor, LHEQLE motif
FRAEX38873_v2_000008150 Dof zinc finger protein
FRAEX38873_v2_000010340 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.