Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000249750
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Position
Contig4766:85713-92473 (-)
6760bp
Gene Type
gene
Gene Description (Protein Product)
Autophagy-related protein
Organism
Fraxinus excelsior
Also AS AT5G61500

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000274530 Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation
FRAEX38873_v2_000296380 Belongs to the ATG8 family
FRAEX38873_v2_000253270 Autophagy protein
Regulatory gene
FRAEX38873_v2_000000110 GAGA binding protein-like family
FRAEX38873_v2_000001820 HD-ZIP protein N terminus
FRAEX38873_v2_000006340 Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000045 autophagosome assembly BP
GO:0000151 ubiquitin ligase complex CC
GO:0000153 cytoplasmic ubiquitin ligase complex CC
GO:0000422 autophagy of mitochondrion BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006914 autophagy BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007033 vacuole organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016236 macroautophagy BP
GO:0016740 transferase activity MF
GO:0019776 Atg8 ligase activity MF
GO:0022411 cellular component disassembly BP
GO:0022607 cellular component assembly BP
GO:0032991 protein-containing complex CC
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044804 autophagy of nucleus BP
GO:0061726 mitochondrion disassembly BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0070925 organelle assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:1902494 catalytic complex CC
GO:1903008 organelle disassembly BP
GO:1905037 autophagosome organization BP
GO:1990234 transferase complex CC