Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000275390
View in Genome Browser
Position
Contig5409:43139-51640 (+)
8501bp
Gene Type
gene
Gene Description (Protein Product)
"Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS)
Organism
Fraxinus excelsior
Also AS AT2G31260

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000304930 WD40 repeats
FRAEX38873_v2_000294500 atatg2,atg2
FRAEX38873_v2_000362860 -
Regulatory gene
FRAEX38873_v2_000001740 (NAC) domain-containing protein
FRAEX38873_v2_000002120 B3 DNA binding domain
FRAEX38873_v2_000005890 No apical meristem (NAM) protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000045 autophagosome assembly BP
GO:0000407 phagophore assembly site CC
GO:0000422 autophagy of mitochondrion BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005776 autophagosome CC
GO:0006914 autophagy BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007033 vacuole organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009620 response to fungus BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016236 macroautophagy BP
GO:0022411 cellular component disassembly BP
GO:0022607 cellular component assembly BP
GO:0033036 macromolecule localization BP
GO:0034497 protein localization to phagophore assembly site BP
GO:0034613 protein localization BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044804 autophagy of nucleus BP
GO:0044805 late nucleophagy BP
GO:0050832 defense response to fungus BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051641 cellular localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0061726 mitochondrion disassembly BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0070727 cellular macromolecule localization BP
GO:0070925 organelle assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098542 defense response to other organism BP
GO:1903008 organelle disassembly BP
GO:1905037 autophagosome organization BP