Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000277200
View in Genome Browser
Position
Contig54577:36976-41702 (+)
4726bp
Gene Type
gene
Gene Description (Protein Product)
Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Organism
Fraxinus excelsior
Also AS AT1G03310

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000387820 Beta-amylase
FRAEX38873_v2_000380550 1,4-alpha-glucan-branching enzyme 3, chloroplastic
FRAEX38873_v2_000304050 PPR repeat
Regulatory gene
FRAEX38873_v2_000008150 Dof zinc finger protein
FRAEX38873_v2_000013020 MADS-box transcription factor
FRAEX38873_v2_000023980 MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000272 polysaccharide catabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004133 glycogen debranching enzyme activity MF
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0005977 glycogen metabolic process BP
GO:0005982 starch metabolic process BP
GO:0005983 starch catabolic process BP
GO:0006073 cellular glucan metabolic process BP
GO:0006091 generation of precursor metabolites and energy BP
GO:0006112 energy reserve metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009251 glucan catabolic process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0010021 amylopectin biosynthetic process BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016052 carbohydrate catabolic process BP
GO:0016787 hydrolase activity MF
GO:0016798 hydrolase activity, acting on glycosyl bonds MF
GO:0019156 isoamylase activity MF
GO:0032991 protein-containing complex CC
GO:0043033 isoamylase complex CC
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044042 glucan metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044247 cellular polysaccharide catabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044262 cellular carbohydrate metabolic process BP
GO:0044264 cellular polysaccharide metabolic process BP
GO:0044275 cellular carbohydrate catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:2000896 amylopectin metabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00500 Starch and sucrose metabolism -