Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000297680
View in Genome Browser
Position
Contig5940:61373-64830 (+)
3457bp
Gene Type
gene
Gene Description (Protein Product)
TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription
Organism
Fraxinus excelsior
Also AS AT4G31720

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000318120 Transcription initiation factor TFIID subunit
FRAEX38873_v2_000376630 TATA-box-binding protein
FRAEX38873_v2_000389100 TATA-box-binding protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000082 G1/S transition of mitotic cell cycle BP
GO:0000123 histone acetyltransferase complex CC
GO:0000125 SAGA complex CC
GO:0000278 mitotic cell cycle BP
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0001889 liver development BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003712 transcription coregulator activity MF
GO:0003713 transcription coactivator activity MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005667 transcription regulator complex CC
GO:0005669 transcription factor TFIID complex CC
GO:0005737 cytoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006325 chromatin organization BP
GO:0006351 DNA-templated transcription BP
GO:0006352 DNA-templated transcription initiation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006367 transcription initiation at RNA polymerase II promoter BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006508 proteolysis BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006915 apoptotic process BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007275 multicellular organism development BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008219 cell death BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009888 tissue development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0012501 programmed cell death BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016573 histone acetylation BP
GO:0016578 histone deubiquitination BP
GO:0016579 protein deubiquitination BP
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0018130 heterocycle biosynthetic process BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0022402 cell cycle process BP
GO:0022607 cellular component assembly BP
GO:0030154 cell differentiation BP
GO:0030331 nuclear estrogen receptor binding MF
GO:0030855 epithelial cell differentiation BP
GO:0030880 RNA polymerase complex CC
GO:0030914 SAGA complex CC
GO:0031248 protein acetyltransferase complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0033276 transcription factor TFTC complex CC
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0035257 nuclear receptor binding MF
GO:0035258 nuclear receptor binding MF
GO:0035264 multicellular organism growth BP
GO:0036211 protein modification process BP
GO:0040007 growth BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043543 protein acylation BP
GO:0043933 protein-containing complex organization BP
GO:0043966 histone H3 acetylation BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0044770 cell cycle phase transition BP
GO:0044772 mitotic cell cycle phase transition BP
GO:0044798 transcription regulator complex CC
GO:0044843 cell cycle G1/S phase transition BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048589 developmental growth BP
GO:0048731 system development BP
GO:0048732 gland development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051098 regulation of binding BP
GO:0051101 regulation of DNA binding BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051259 protein complex oligomerization BP
GO:0051260 protein homooligomerization BP
GO:0051276 chromosome organization BP
GO:0051427 hormone receptor binding MF
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060429 epithelium development BP
GO:0061008 hepaticobiliary system development BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070063 RNA polymerase binding MF
GO:0070365 hepatocyte differentiation BP
GO:0070461 SAGA-type complex CC
GO:0070646 protein modification by small protein removal BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0097159 organic cyclic compound binding MF
GO:0097659 nucleic acid-templated transcription BP
GO:0140110 transcription regulator activity MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902493 acetyltransferase complex CC
GO:1902494 catalytic complex CC
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1903047 mitotic cell cycle process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:1990234 transferase complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03022 Basal transcription factors -