Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000300030
View in Genome Browser
Position
Contig5997:37437-40085 (-)
2648bp
Gene Type
gene
Gene Description (Protein Product)
"DNA-directed RNA polymerases I
Organism
Fraxinus excelsior
Also AS AT1G61700

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000334350 DNA-directed RNA
FRAEX38873_v2_000318750 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FRAEX38873_v2_000379850 DNA-directed RNA polymerase II 19 kD polypeptide rpb7

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000418 RNA polymerase IV complex CC
GO:0000419 RNA polymerase V complex CC
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005665 RNA polymerase II, core complex CC
GO:0005666 RNA polymerase III complex CC
GO:0005730 nucleolus CC
GO:0005736 RNA polymerase I complex CC
GO:0008270 zinc ion binding MF
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0030880 RNA polymerase complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032991 protein-containing complex CC
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044452 obsolete nucleolar part CC
GO:0044464 obsolete cell part CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0070013 intracellular organelle lumen CC
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
KEGG Term Name Description
map03020 RNA polymerase -