PPGR - Gene Detail

Basic Information

Gene ID	FRAEX38873_v2_000314970 View in Genome Browser
Position	Contig64750:170-594 (+) 424bp
Gene Type	gene
Gene Description (Protein Product)	ATP-dependent helicase
Organism	Fraxinus excelsior
Also AS	AT2G46020

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

FRAEX38873_v2_000342320 Protease Do-like 10, mitochondrial

FRAEX38873_v2_000326120 Truncated transcription factor CAULIFLOWER

FRAEX38873_v2_000366280 transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003682	chromatin binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006325	chromatin organization	BP
GO:0006338	chromatin remodeling	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009987	cellular process	BP
GO:0010199	organ boundary specification between lateral organs and the meristem	BP
GO:0010468	regulation of gene expression	BP
GO:0016043	cellular component organization	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0032502	developmental process	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0043044	chromatin remodeling	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048856	anatomical structure development	BP
GO:0048859	formation of anatomical boundary	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0060147	regulation of post-transcriptional gene silencing	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060964	regulation of miRNA-mediated gene silencing	BP
GO:0060966	regulation of gene silencing by RNA	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0065007	biological regulation	BP
GO:0070920	regulation of production of small RNA involved in gene silencing by RNA	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0080135	regulation of cellular response to stress	BP
GO:0090691	formation of plant organ boundary	BP
GO:0097159	organic cyclic compound binding	MF
GO:1900034	regulation of cellular response to heat	BP
GO:1900036	positive regulation of cellular response to heat	BP
GO:1901363	heterocyclic compound binding	MF
GO:1903798	regulation of miRNA maturation	BP