Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000386600
View in Genome Browser
Position
Contig9294:14552-22204 (-)
7652bp
Gene Type
gene
Gene Description (Protein Product)
snRNA processing
Organism
Fraxinus excelsior
Also AS AT3G08800

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000400440 rna polymerase
FRAEX38873_v2_000400430 DNA-directed 5'-3' RNA polymerase activity
FRAEX38873_v2_000389100 TATA-box-binding protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003002 regionalization BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009956 radial pattern formation BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010496 intercellular transport BP
GO:0012505 endomembrane system CC
GO:0016070 RNA metabolic process BP
GO:0016073 snRNA metabolic process BP
GO:0016180 snRNA processing BP
GO:0022622 root system development BP
GO:0031123 RNA 3'-end processing BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0034470 ncRNA processing BP
GO:0034472 snRNA 3'-end processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043628 regulatory ncRNA 3'-end processing BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048364 root development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0071704 organic substance metabolic process BP
GO:0090057 root radial pattern formation BP
GO:0090304 nucleic acid metabolic process BP
GO:0097708 intracellular vesicle CC
GO:0099402 plant organ development BP
GO:1901360 organic cyclic compound metabolic process BP