Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000393570
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Position
Contig964:41926-47815 (-)
5889bp
Gene Type
gene
Gene Description (Protein Product)
peptidyl-prolyl cis-trans isomerase
Organism
Fraxinus excelsior
Also AS AT2G15790

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000398880 histone H2B
FRAEX38873_v2_000398820 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
FRAEX38873_v2_000396430 DnaB-like helicase C terminal domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000413 protein peptidyl-prolyl isomerization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009791 post-embryonic development BP
GO:0009888 tissue development BP
GO:0009908 flower development BP
GO:0009987 cellular process BP
GO:0010022 meristem determinacy BP
GO:0010050 vegetative phase change BP
GO:0010073 meristem maintenance BP
GO:0010582 floral meristem determinacy BP
GO:0016853 isomerase activity MF
GO:0016859 cis-trans isomerase activity MF
GO:0018193 peptidyl-amino acid modification BP
GO:0018208 peptidyl-proline modification BP
GO:0019538 protein metabolic process BP
GO:0022414 reproductive process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0048367 shoot system development BP
GO:0048507 meristem development BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0061458 reproductive system development BP
GO:0071704 organic substance metabolic process BP
GO:0090567 reproductive shoot system development BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP