Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000396630
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Position
Contig98:189382-199975 (+)
10593bp
Gene Type
gene
Gene Description (Protein Product)
Ornithine aminotransferase
Organism
Fraxinus excelsior
Also AS AT5G46180

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000397900 Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0002376 immune system process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004587 ornithine-oxo-acid transaminase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006525 arginine metabolic process BP
GO:0006527 arginine catabolic process BP
GO:0006536 glutamate metabolic process BP
GO:0006560 proline metabolic process BP
GO:0006561 proline biosynthetic process BP
GO:0006591 ornithine metabolic process BP
GO:0006593 ornithine catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0006970 response to osmotic stress BP
GO:0006972 hyperosmotic response BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008219 cell death BP
GO:0008270 zinc ion binding MF
GO:0008483 transaminase activity MF
GO:0008652 amino acid biosynthetic process BP
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009063 amino acid catabolic process BP
GO:0009064 glutamine family amino acid metabolic process BP
GO:0009065 glutamine family amino acid catabolic process BP
GO:0009084 glutamine family amino acid biosynthetic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009626 plant-type hypersensitive response BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009814 defense response to other organism BP
GO:0009816 defense response to bacterium BP
GO:0009987 cellular process BP
GO:0012501 programmed cell death BP
GO:0016053 organic acid biosynthetic process BP
GO:0016054 organic acid catabolic process BP
GO:0016740 transferase activity MF
GO:0016769 transferase activity, transferring nitrogenous groups MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019544 arginine catabolic process to glutamate BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019842 vitamin binding MF
GO:0030170 pyridoxal phosphate binding MF
GO:0031974 membrane-enclosed lumen CC
GO:0033554 cellular response to stress BP
GO:0034050 programmed cell death induced by symbiont BP
GO:0036094 small molecule binding MF
GO:0042538 hyperosmotic salinity response BP
GO:0042742 defense response to bacterium BP
GO:0042802 identical protein binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043169 cation binding MF
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043436 oxoacid metabolic process BP
GO:0043648 dicarboxylic acid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046395 carboxylic acid catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048037 obsolete cofactor binding MF
GO:0050662 obsolete coenzyme binding MF
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051646 mitochondrion localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0070013 intracellular organelle lumen CC
GO:0070279 vitamin B6 binding MF
GO:0071704 organic substance metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098542 defense response to other organism BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901606 alpha-amino acid catabolic process BP
GO:1901607 alpha-amino acid biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00330 Arginine and proline metabolism -