Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000397200
View in Genome Browser
Position
Contig982:24033-35885 (-)
11852bp
Gene Type
gene
Gene Description (Protein Product)
WD40 repeats
Organism
Fraxinus excelsior
Also AS AT1G27470

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000398390 Sas10/Utp3/C1D family
FRAEX38873_v2_000399770 Ribosomal protein L1p/L10e family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009888 tissue development BP
GO:0010015 root morphogenesis BP
GO:0010051 xylem and phloem pattern formation BP
GO:0010073 meristem maintenance BP
GO:0010101 post-embryonic root morphogenesis BP
GO:0010102 lateral root morphogenesis BP
GO:0010154 fruit development BP
GO:0010305 leaf vascular tissue pattern formation BP
GO:0010311 lateral root formation BP
GO:0010449 root meristem growth BP
GO:0010817 regulation of hormone levels BP
GO:0022414 reproductive process BP
GO:0022622 root system development BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032879 regulation of localization BP
GO:0035266 meristem growth BP
GO:0040007 growth BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048316 seed development BP
GO:0048364 root development BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048507 meristem development BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048589 developmental growth BP
GO:0048608 reproductive structure development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0051049 regulation of transport BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0090696 post-embryonic plant organ development BP
GO:0090697 post-embryonic plant organ morphogenesis BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0099402 plant organ development BP
GO:1905392 plant organ morphogenesis BP
GO:1905393 plant organ formation BP
GO:2000012 regulation of auxin polar transport BP
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.