Basic Information
Gene ID
Position
GWHBAVD00000004:580766784-580830500 (+)
63716bp
Gene Type
gene
Gene Description (Protein Product)
Frataxin
Organism
Also AS AT4G03240evm.TU.chr2.1634

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ginchr2.48 Belongs to the complex I LYR family
Ginchr3.1869 Heme oxygenase
Ginchr2.889 Heme oxygenase 1
Regulatory gene
Ginchr1.2482 Cyclic dof factor
Ginchr10.1672 dof zinc finger protein
Ginchr11.1417 dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0000302 response to reactive oxygen species BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004322 ferroxidase activity MF
GO:0005488 binding MF
GO:0005506 iron ion binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0006464 protein modification process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006875 obsolete intracellular metal ion homeostasis BP
GO:0006879 intracellular iron ion homeostasis BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008198 ferrous iron binding MF
GO:0008199 ferric iron binding MF
GO:0009060 aerobic respiration BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009636 response to toxic substance BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016043 cellular component organization BP
GO:0016226 iron-sulfur cluster assembly BP
GO:0016491 oxidoreductase activity MF
GO:0016530 metallochaperone activity MF
GO:0016722 oxidoreductase activity, acting on metal ions MF
GO:0016724 oxidoreductase activity, acting on metal ions, oxygen as acceptor MF
GO:0018282 metal incorporation into metallo-sulfur cluster BP
GO:0018283 iron incorporation into metallo-sulfur cluster BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019725 cellular homeostasis BP
GO:0022607 cellular component assembly BP
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0031163 metallo-sulfur cluster assembly BP
GO:0031323 regulation of cellular metabolic process BP
GO:0033554 cellular response to stress BP
GO:0034599 cellular response to oxidative stress BP
GO:0034986 iron chaperone activity MF
GO:0036211 protein modification process BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042542 response to hydrogen peroxide BP
GO:0042592 homeostatic process BP
GO:0042762 regulation of sulfur metabolic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045333 cellular respiration BP
GO:0046677 response to antibiotic BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0046916 obsolete intracellular transition metal ion homeostasis BP
GO:0048037 obsolete cofactor binding MF
GO:0048878 chemical homeostasis BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050801 monoatomic ion homeostasis BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051193 obsolete regulation of cofactor metabolic process BP
GO:0051536 iron-sulfur cluster binding MF
GO:0051537 2 iron, 2 sulfur cluster binding MF
GO:0051540 metal cluster binding MF
GO:0051716 cellular response to stimulus BP
GO:0055065 obsolete metal ion homeostasis BP
GO:0055072 iron ion homeostasis BP
GO:0055076 obsolete transition metal ion homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098771 inorganic ion homeostasis BP
GO:0140104 molecular carrier activity MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1903329 regulation of iron-sulfur cluster assembly BP
KEGG Term Name Description
map00860 Porphyrin and chlorophyll metabolism -