Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ginchr2.428
View in Genome Browser
Position
GWHBAVD00000004:158031356-158034275 (+)
2919bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the disease resistance NB-LRR family
Organism
Ginkgo biloba
Also AS AT4G26090evm.TU.chr2.428

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ginchr4.951 Cleavage site for pathogenic type III effector avirulence factor Avr
Ginchr3.1642 Cleavage site for pathogenic type III effector avirulence factor Avr
Ginchr7.1304 belongs to the protein kinase superfamily
Regulatory gene
Ginchr1.1198 Zinc finger protein
Ginchr1.1358 MADS-box transcription factor 6
Ginchr1.1364 MADS-box transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0002376 immune system process BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0008150 biological_process BP
GO:0008219 cell death BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009626 plant-type hypersensitive response BP
GO:0009814 defense response to other organism BP
GO:0009816 defense response to bacterium BP
GO:0009987 cellular process BP
GO:0012501 programmed cell death BP
GO:0016020 membrane CC
GO:0023052 signaling BP
GO:0033554 cellular response to stress BP
GO:0034050 programmed cell death induced by symbiont BP
GO:0036094 small molecule binding MF
GO:0038023 signaling receptor activity MF
GO:0042742 defense response to bacterium BP
GO:0042802 identical protein binding MF
GO:0043207 response to external biotic stimulus BP
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0060089 molecular transducer activity MF
GO:0065007 biological regulation BP
GO:0071944 cell periphery CC
GO:0097159 organic cyclic compound binding MF
GO:0098542 defense response to other organism BP
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
KEGG Term Name Description
map04626 Plant-pathogen interaction Plants lack animal-like adaptive immunity mechanisms, and therefore have evolved a specific system with multiple layers against invading pathogens. The primary response includes the perception of pathogens by cell-surface pattern-recognition receptors (PRRs) and is referred to as PAMP-triggered immunity (PTI). Activation of FLS2 and EFR triggers MAPK signaling pathway that activates defense genes for antimictobial compounds. The increase in the cytosolic Ca2+ concentration is also a regulator for production of reactive oxygen species and localized programmed cell death/hypersensitive response. The secondary response is called effector-triggered immunity (ETI). Pathogens can acquire the ability to suppress PTI by directly injecting effector proteins into the plant cell through secretion systems. In addition, pathogens can manipulate plant hormone signaling pathways to evade host immune responses using coronatine toxin. Some plants possess specific intracellular surveillance proteins (R proteins) to monitor the presence of pathogen virulence proteins. This ETI occurs with localized programmed cell death to arrest pathogen growth, resulting in cultivar-specific disease resistance.
map04626 Plant-pathogen interaction Plants lack animal-like adaptive immunity mechanisms, and therefore have evolved a specific system with multiple layers against invading pathogens. The primary response includes the perception of pathogens by cell-surface pattern-recognition receptors (PRRs) and is referred to as PAMP-triggered immunity (PTI). Activation of FLS2 and EFR triggers MAPK signaling pathway that activates defense genes for antimictobial compounds. The increase in the cytosolic Ca2+ concentration is also a regulator for production of reactive oxygen species and localized programmed cell death/hypersensitive response. The secondary response is called effector-triggered immunity (ETI). Pathogens can acquire the ability to suppress PTI by directly injecting effector proteins into the plant cell through secretion systems. In addition, pathogens can manipulate plant hormone signaling pathways to evade host immune responses using coronatine toxin. Some plants possess specific intracellular surveillance proteins (R proteins) to monitor the presence of pathogen virulence proteins. This ETI occurs with localized programmed cell death to arrest pathogen growth, resulting in cultivar-specific disease resistance.