PPGR - Gene Detail

Gene ID	Ginchr2.538 View in Genome Browser
Position	GWHBAVD00000004:193250216-193250947 (-) 731bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the UPP synthase family
Organism	Ginkgo biloba
Also AS	AT2G17570evm.TU.chr2.538

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Ginchr3.1279 Belongs to the FPP GGPP synthase family Ginchr9.735 Belongs to the terpene synthase family Ginchr3.92 Protein farnesyltransferase geranylgeranyltransferase type-1 subunit alpha
Regulatory gene	Ginchr1.1425 DNA-binding domain in plant proteins such as APETALA2 and EREBPs Ginchr1.1943 (NAC) domain-containing protein Ginchr1.2482 Cyclic dof factor

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0002094	polyprenyltransferase activity	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004659	prenyltransferase activity	MF
GO:0006066	alcohol metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008299	isoprenoid biosynthetic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016093	polyprenol metabolic process	BP
GO:0016094	polyprenol biosynthetic process	BP
GO:0016740	transferase activity	MF
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0046165	alcohol biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map00900	Terpenoid backbone biosynthesis	Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.