PPGR - Gene Detail

Gene ID	Ginchr4.2344 View in Genome Browser
Position	GWHBAVD00000006:763606248-763610105 (-) 3857bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the TPP enzyme family
Organism	Ginkgo biloba
Also AS	AT5G54960evm.TU.chr4.2344

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Ginchr6.620 Belongs to the aldehyde dehydrogenase family Ginchr7.383 Alcohol dehydrogenase-like Ginchr7.535 Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis
Regulatory gene	Ginchr1.1044 Transcription factor Ginchr1.1432 WRKY Transcription Factor Ginchr1.1433 WRKY Transcription Factor

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0001666	response to hypoxia	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006950	response to stress	BP
GO:0008150	biological_process	BP
GO:0009628	response to abiotic stimulus	BP
GO:0016020	membrane	CC
GO:0016829	lyase activity	MF
GO:0016830	carbon-carbon lyase activity	MF
GO:0016831	carboxy-lyase activity	MF
GO:0034059	response to anoxia	BP
GO:0036293	response to decreased oxygen levels	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0070482	response to oxygen levels	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00010	Glycolysis / Gluconeogenesis	Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which often corresponds to operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].