PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Ginchr4.712 View in Genome Browser
Position	GWHBAVD00000006:205443847-205455917 (+) 12070bp
Gene Type	gene
Gene Description (Protein Product)	"SANT SWI3
Organism	Ginkgo biloba
Also AS	AT5G37260evm.TU.chr4.712

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Ginchr7.1699 Gigantea-like Ginchr7.879 Protein EARLY FLOWERING Ginchr8.550 Protein EARLY FLOWERING
Regulatory gene	Ginchr1.1358 MADS-box transcription factor 6 Ginchr1.1364 MADS-box transcription factor Ginchr1.1375 Agamous-like MADS-box protein
Target gene	Ginchr1.1 Belongs to the protein kinase superfamily. Ser Thr protein kinase family Ginchr1.1009 Upstream activation factor subunit Ginchr1.101 RPM1-interacting protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0001101	response to acid chemical	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0007275	multicellular organism development	BP
GO:0007623	circadian rhythm	BP
GO:0008150	biological_process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009314	response to radiation	BP
GO:0009409	response to cold	BP
GO:0009416	response to light stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009648	photoperiodism	BP
GO:0009651	response to salt stress	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009723	response to ethylene	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0009737	response to abscisic acid	BP
GO:0009739	response to gibberellin	BP
GO:0009751	response to salicylic acid	BP
GO:0009753	response to jasmonic acid	BP
GO:0009791	post-embryonic development	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0010228	vegetative to reproductive phase transition of meristem	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0014070	response to organic cyclic compound	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0022414	reproductive process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033993	response to lipid	BP
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042752	regulation of circadian rhythm	BP
GO:0042754	negative regulation of circadian rhythm	BP
GO:0043433	negative regulation of DNA-binding transcription factor activity	BP
GO:0044092	negative regulation of molecular function	BP
GO:0044212	transcription cis-regulatory region binding	MF
GO:0046677	response to antibiotic	BP
GO:0046686	response to cadmium ion	BP
GO:0048511	rhythmic process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048571	long-day photoperiodism	BP
GO:0048573	photoperiodism, flowering	BP
GO:0048574	long-day photoperiodism, flowering	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051090	regulation of DNA-binding transcription factor activity	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097305	response to alcohol	BP
GO:0140110	transcription regulator activity	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901700	response to oxygen-containing compound	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-
map04712	Circadian rhythm - plant	-