PPGR - Gene Detail

Basic Information

Gene ID	Ginchr5.288 View in Genome Browser
Position	GWHBAVD00000007:88037883-88309518 (+) 271635bp
Gene Type	gene
Gene Description (Protein Product)	Exonuclease domain-containing protein
Organism	Ginkgo biloba
Also AS	AT3G15140evm.TU.chr5.288

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ginchr6.816 Small RNA degrading nuclease

Ginchr7.1496 Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one- codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner

Ginchr7.1497 Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one- codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner

Regulatory gene

Ginchr1.1413 Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Ginchr1.1560 Protein BASIC PENTACYSTEINE6-like

Ginchr1.2482 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004518	nuclease activity	MF
GO:0004519	endonuclease activity	MF
GO:0004521	RNA endonuclease activity	MF
GO:0004540	ribonuclease activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016441	post-transcriptional gene silencing	BP
GO:0016458	obsolete gene silencing	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	MF
GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0031047	RNA-mediated gene silencing	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035194	RNA-mediated post-transcriptional gene silencing	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0060147	regulation of post-transcriptional gene silencing	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060966	regulation of gene silencing by RNA	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0065007	biological regulation	BP
GO:0070920	regulation of production of small RNA involved in gene silencing by RNA	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090065	regulation of siRNA production	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090305	nucleic acid phosphodiester bond hydrolysis	BP
GO:0090501	RNA phosphodiester bond hydrolysis	BP
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:1900368	regulation of post-transcriptional gene silencing by RNA	BP
GO:1901360	organic cyclic compound metabolic process	BP