PPGR - Gene Detail

Basic Information

Gene ID	Ginchr9.1160 View in Genome Browser
Position	GWHBAVD00000011:330126140-330230640 (+) 104500bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the peptidase M18 family
Organism	Ginkgo biloba
Also AS	AT5G60160evm.TU.chr9.1160

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ginchr9.405 Methyltransferase

Ginchr9.128 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Ginchr9.180 Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004177	aminopeptidase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006508	proteolysis	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008233	peptidase activity	MF
GO:0008235	metalloexopeptidase activity	MF
GO:0008237	metallopeptidase activity	MF
GO:0008238	exopeptidase activity	MF
GO:0009987	cellular process	BP
GO:0016787	hydrolase activity	MF
GO:0019538	protein metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042802	identical protein binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0070006	metalloaminopeptidase activity	MF
GO:0070011	peptidase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP