Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ginchr9.1763
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Position
GWHBAVD00000011:551423315-551424360 (-)
1045bp
Gene Type
gene
Gene Description (Protein Product)
DNA-directed 5'-3' RNA polymerase activity
Organism
Ginkgo biloba
Also AS AT5G41010evm.TU.chr9.1763

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ginchr9.2145 CDK-activating kinase assembly factor MAT1
Ginchr9.2166 Transcription initiation factor IIF
Ginchr9.623 May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000375 RNA splicing, via transesterification reactions BP
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile BP
GO:0000398 mRNA splicing, via spliceosome BP
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003899 DNA-directed 5'-3' RNA polymerase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005665 RNA polymerase II, core complex CC
GO:0005666 RNA polymerase III complex CC
GO:0005730 nucleolus CC
GO:0005736 RNA polymerase I complex CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006281 DNA repair BP
GO:0006283 transcription-coupled nucleotide-excision repair BP
GO:0006289 nucleotide-excision repair BP
GO:0006351 DNA-templated transcription BP
GO:0006352 DNA-templated transcription initiation BP
GO:0006353 DNA-templated transcription termination BP
GO:0006354 DNA-templated transcription elongation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006356 regulation of transcription by RNA polymerase I BP
GO:0006360 transcription by RNA polymerase I BP
GO:0006361 transcription initiation at RNA polymerase I promoter BP
GO:0006363 termination of RNA polymerase I transcription BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006367 transcription initiation at RNA polymerase II promoter BP
GO:0006368 transcription elongation by RNA polymerase II BP
GO:0006370 7-methylguanosine mRNA capping BP
GO:0006383 transcription by RNA polymerase III BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007166 cell surface receptor signaling pathway BP
GO:0007167 enzyme-linked receptor protein signaling pathway BP
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0008380 RNA splicing BP
GO:0008543 fibroblast growth factor receptor signaling pathway BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009301 snRNA transcription BP
GO:0009304 tRNA transcription BP
GO:0009452 7-methylguanosine RNA capping BP
GO:0009719 response to endogenous stimulus BP
GO:0009889 regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016073 snRNA metabolic process BP
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016779 nucleotidyltransferase activity MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0023052 signaling BP
GO:0030880 RNA polymerase complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0034062 5'-3' RNA polymerase activity MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0036260 RNA capping BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042221 response to chemical BP
GO:0042795 snRNA transcription by RNA polymerase II BP
GO:0042797 tRNA transcription by RNA polymerase III BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044344 cellular response to fibroblast growth factor stimulus BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044452 obsolete nucleolar part CC
GO:0044464 obsolete cell part CC
GO:0045815 transcription initiation-coupled chromatin remodeling BP
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048518 positive regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0060147 regulation of post-transcriptional gene silencing BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060964 regulation of miRNA-mediated gene silencing BP
GO:0060966 regulation of gene silencing by RNA BP
GO:0060968 obsolete regulation of gene silencing BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070848 response to growth factor BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071310 cellular response to organic substance BP
GO:0071363 cellular response to growth factor stimulus BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071774 response to fibroblast growth factor BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097659 nucleic acid-templated transcription BP
GO:0097747 RNA polymerase activity MF
GO:0098781 ncRNA transcription BP
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1990234 transferase complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03020 RNA polymerase -