PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Gene ID	JcaChr01G13820.g View in Genome Browser
Position	chr1:39157698-39159512 (+) 1814bp
Gene Type	gene
Gene Description (Protein Product)	Growth-regulating factor
Organism	Juglans cathayensis
Also AS	AT3G13960

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	JcaChr08G11535.g grf1-interacting factor JcaChr07G11001.g grf1-interacting factor JcaChr06G10230.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Regulatory gene	JcaChr01G10497.g ZF-HD protein dimerisation region JcaChr01G11970.g B3 domain-containing protein JcaChr01G12547.g Dof zinc finger protein
Target gene	JcaChr01G10069.g - JcaChr01G10180.g JcaChr01G10274.g Domain of unknown function (DUF4228)

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0099402	plant organ development	BP