Basic Information
Gene ID
JcaChr11G10245.g
Position
chr11:2728161-2731927 (-)
3766bp
Gene Type
gene
Gene Description (Protein Product)
Involved in nucleolar processing of pre-18S ribosomal RNA
Organism
Also AS AT5G66540

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JcaChr11G10607.g U3 small nucleolar ribonucleoprotein protein
JcaChr14G11397.g protein DDB_G0270496 isoform X1
JcaChr11G10848.g Belongs to the DEAD box helicase family
Regulatory gene
JcaChr01G10316.g AP2-like ethylene-responsive transcription factor
JcaChr01G10545.g Transcription factor
JcaChr01G11706.g Floral homeotic protein APETALA

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.