Basic Information
Gene ID
JcaChr11G10291.g
Position
chr11:3341107-3344615 (+)
3508bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the spermidine spermine synthase family
Organism
Also AS AT1G23820

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JcaChr13G10052.g Polyamine oxidase
JcaChr14G11225.g Polyamine oxidase
JcaChr13G11694.g N-carbamoylputrescine amidase
Regulatory gene
JcaChr01G10316.g AP2-like ethylene-responsive transcription factor
JcaChr01G10428.g ZINC FINGER protein
JcaChr01G10490.g lysine-specific demethylase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map01100 Metabolic pathways -
map00480 Glutathione metabolism -
map00330 Arginine and proline metabolism -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].