PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Gene ID	JcaChr11G11366.g View in Genome Browser
Position	chr11:20650046-20653104 (-) 3058bp
Gene Type	gene
Gene Description (Protein Product)	SNF2 domain-containing protein CLASSY
Organism	Juglans cathayensis
Also AS	AT1G05490

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)

JcaChr12G11352.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

JcaChr13G10140.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

JcaChr13G11762.g SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Regulatory gene

JcaChr05G10606.g Protein BASIC PENTACYSTEINE4-like

JcaChr05G11449.g Protein BASIC PENTACYSTEINE2-like

JcaChr06G10816.g Protein BASIC PENTACYSTEINE2-like

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

KEGG Term	Name	Description
map03440	Homologous recombination	Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.