Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
JcaChr12G11124.g
View in Genome Browser
Position
chr12:15963952-15967425 (+)
3473bp
Gene Type
gene
Gene Description (Protein Product)
nephrocystin-3-like
Organism
Juglans cathayensis
Also AS AT4G10840

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JcaChr15G10428.g Pollen-specific protein
JcaChr13G11298.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
JcaChr15G11041.g RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
Regulatory gene
JcaChr01G10428.g ZINC FINGER protein
JcaChr01G10490.g lysine-specific demethylase
JcaChr01G10497.g ZF-HD protein dimerisation region

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0002009 morphogenesis of an epithelium BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005856 cytoskeleton CC
GO:0005874 microtubule CC
GO:0005886 plasma membrane CC
GO:0005929 cilium CC
GO:0006996 organelle organization BP
GO:0007275 multicellular organism development BP
GO:0007369 gastrulation BP
GO:0008150 biological_process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009888 tissue development BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0015630 microtubule cytoskeleton CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030031 cell projection assembly BP
GO:0030111 regulation of Wnt signaling pathway BP
GO:0030178 negative regulation of Wnt signaling pathway BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0042995 cell projection CC
GO:0043226 organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044782 cilium organization BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048598 embryonic morphogenesis BP
GO:0048729 tissue morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0060026 convergent extension BP
GO:0060027 convergent extension involved in gastrulation BP
GO:0060271 cilium assembly BP
GO:0060429 epithelium development BP
GO:0060828 regulation of canonical Wnt signaling pathway BP
GO:0065007 biological regulation BP
GO:0070925 organelle assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090090 negative regulation of canonical Wnt signaling pathway BP
GO:0090175 regulation of establishment of planar polarity BP
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0120025 plasma membrane bounded cell projection CC
GO:0120031 plasma membrane bounded cell projection assembly BP
GO:0120036 plasma membrane bounded cell projection organization BP
GO:1905330 regulation of morphogenesis of an epithelium BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000027 regulation of animal organ morphogenesis BP
GO:2000050 regulation of non-canonical Wnt signaling pathway BP
GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway BP