PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	JcaChr13G10452.g View in Genome Browser
Position	chr13:4012411-4014760 (-) 2349bp
Gene Type	gene
Gene Description (Protein Product)	Nuclear pore complex protein
Organism	Juglans cathayensis
Also AS	AT3G10650

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	JcaChr13G12221.g Nuclear pore complex protein JcaChr13G11944.g RNA-binding protein JcaChr13G11921.g Nuclear cap-binding protein subunit
Regulatory gene	JcaChr01G10034.g Homeobox-leucine zipper protein JcaChr01G10084.g Homeobox-leucine zipper protein GLABRA JcaChr01G10316.g AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.