PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Basic Information

Gene ID	JcaChr13G11216.g View in Genome Browser
Position	chr13:11976771-11982964 (-) 6193bp
Gene Type	gene
Gene Description (Protein Product)	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Organism	Juglans cathayensis
Also AS	AT2G28350

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	JcaChr14G10393.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations JcaChr15G11040.g RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site JcaChr15G11041.g RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
Regulatory gene	JcaChr05G10606.g Protein BASIC PENTACYSTEINE4-like JcaChr05G11449.g Protein BASIC PENTACYSTEINE2-like JcaChr06G10816.g Protein BASIC PENTACYSTEINE2-like
Target gene	JcaChr01G10007.g Geranylgeranyl diphosphate reductase JcaChr01G10008.g DNA repair protein JcaChr01G10109.g

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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