PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	JcaChr15G11891.g View in Genome Browser
Position	chr15:25616838-25619003 (-) 2165bp
Gene Type	gene
Gene Description (Protein Product)	glycosyltransferase
Organism	Juglans cathayensis
Also AS	AT3G18170

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	JcaChr16G10675.g Introduction of a cis double bond between carbons of the acyl chain JcaChr15G12158.g Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily JcaChr15G11952.g Phosphoethanolamine N-methyltransferase
Regulatory gene	JcaChr01G10036.g Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters JcaChr01G10428.g ZINC FINGER protein JcaChr01G10490.g lysine-specific demethylase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00514	Other types of O-glycan biosynthesis	O-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or threonine residue, which is catalyzed by protein O-mannosyltransferases POMT1 and POMT2. Defects of these genes are linked to human diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].