PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	JcaChr16G10008.g View in Genome Browser
Position	chr16:92761-96570 (+) 3809bp
Gene Type	gene
Gene Description (Protein Product)	Splicing factor 3B subunit
Organism	Juglans cathayensis
Also AS	AT5G64270

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	JcaChr16G11408.g 116 kDa U5 small nuclear ribonucleoprotein JcaChr16G11132.g pre-mRNA-splicing factor SPF27 homolog JcaChr16G10622.g U6 snRNA-associated Sm-like protein
Regulatory gene	JcaChr01G10021.g transcription factor JcaChr01G10034.g Homeobox-leucine zipper protein JcaChr01G10084.g Homeobox-leucine zipper protein GLABRA

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.