Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
JcaChr16G10266.g
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Position
chr16:3135014-3141449 (+)
6435bp
Gene Type
gene
Gene Description (Protein Product)
Protein ROOT INITIATION DEFECTIVE
Organism
Juglans cathayensis
Also AS AT3G49180

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JcaChr16G11075.g DENN domain and WD repeat-containing protein SCD1
JcaChr16G10986.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
JcaChr16G11074.g DENN domain and WD repeat-containing protein SCD1
Regulatory gene
JcaChr01G10034.g Homeobox-leucine zipper protein
JcaChr01G10084.g Homeobox-leucine zipper protein GLABRA
JcaChr01G10941.g Homeobox-leucine zipper protein ANTHOCYANINLESS

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000151 ubiquitin ligase complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0008150 biological_process BP
GO:0031461 cullin-RING ubiquitin ligase complex CC
GO:0032991 protein-containing complex CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048509 regulation of meristem development BP
GO:0048519 negative regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0051093 negative regulation of developmental process BP
GO:0065007 biological regulation BP
GO:0080008 Cul4-RING E3 ubiquitin ligase complex CC
GO:1902183 regulation of shoot apical meristem development BP
GO:1902184 negative regulation of shoot apical meristem development BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC