PPGR - Gene Detail

Basic Information

Gene ID	JcaChr16G10628.g View in Genome Browser
Position	chr16:7641025-7641321 (+) 296bp
Gene Type	gene
Gene Description (Protein Product)	eukaryotic translation initiation factor
Organism	Juglans cathayensis
Also AS	AT1G76810

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JcaChr16G10986.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

JcaChr16G11134.g Guanine nucleotide-binding protein subunit beta-like protein

JcaChr16G10751.g Belongs to the universal ribosomal protein uS12 family

Regulatory gene

JcaChr01G11970.g B3 domain-containing protein

JcaChr01G12547.g Dof zinc finger protein

JcaChr01G12589.g dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.