PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	JhiChr03G12741.g View in Genome Browser
Position	chr3:35765901-35775011 (-) 9110bp
Gene Type	gene
Gene Description (Protein Product)	PCI domain-containing protein
Organism	Juglans hindsii
Also AS	AT2G19560

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JhiChr13G12015.g SAC3 family

JhiChr05G11080.g Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

JhiChr04G10333.g Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

Regulatory gene

JhiChr05G10706.g Protein BASIC PENTACYSTEINE4-like

JhiChr06G10857.g Protein BASIC PENTACYSTEINE2-like

JhiChr06G10933.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000160	phosphorelay signal transduction system	BP
GO:0000956	nuclear-transcribed mRNA catabolic process	BP
GO:0000972	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	BP
GO:0000973	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	BP
GO:0002376	immune system process	BP
GO:0002520	immune system development	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006351	DNA-templated transcription	BP
GO:0006354	DNA-templated transcription elongation	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006368	transcription elongation by RNA polymerase II	BP
GO:0006401	RNA catabolic process	BP
GO:0006402	mRNA catabolic process	BP
GO:0006403	RNA localization	BP
GO:0006405	RNA export from nucleus	BP
GO:0006406	mRNA export from nucleus	BP
GO:0006611	protein export from nucleus	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0006996	organelle organization	BP
GO:0007088	regulation of mitotic nuclear division	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008298	intracellular mRNA localization	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009723	response to ethylene	BP
GO:0009725	response to hormone	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009873	ethylene-activated signaling pathway	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009894	regulation of catabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010466	negative regulation of peptidase activity	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010564	regulation of cell cycle process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010941	regulation of cell death	BP
GO:0010951	negative regulation of endopeptidase activity	BP
GO:0010965	regulation of mitotic sister chromatid separation	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015931	nucleobase-containing compound transport	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016973	poly(A)+ mRNA export from nucleus	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0022622	root system development	BP
GO:0023052	signaling	BP
GO:0030071	regulation of mitotic metaphase/anaphase transition	BP
GO:0030162	regulation of proteolysis	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031329	regulation of cellular catabolic process	BP
GO:0031503	protein-containing complex localization	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032870	cellular response to hormone stimulus	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0033045	regulation of sister chromatid segregation	BP
GO:0033047	regulation of mitotic sister chromatid segregation	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0035556	intracellular signal transduction	BP
GO:0042221	response to chemical	BP
GO:0042886	amide transport	BP
GO:0042981	regulation of apoptotic process	BP
GO:0043066	negative regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043069	negative regulation of programmed cell death	BP
GO:0043086	negative regulation of catalytic activity	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043487	regulation of RNA stability	BP
GO:0043488	regulation of mRNA stability	BP
GO:0044092	negative regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045184	establishment of protein localization	BP
GO:0045787	positive regulation of cell cycle	BP
GO:0045861	negative regulation of proteolysis	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045931	positive regulation of mitotic cell cycle	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046907	intracellular transport	BP
GO:0048364	root development	BP
GO:0048513	animal organ development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048534	hematopoietic or lymphoid organ development	BP
GO:0048536	spleen development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050657	nucleic acid transport	BP
GO:0050658	RNA transport	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051028	mRNA transport	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051168	nuclear export	BP
GO:0051169	nuclear transport	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051236	establishment of RNA localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051346	negative regulation of hydrolase activity	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0051783	regulation of nuclear division	BP
GO:0051983	regulation of chromosome segregation	BP
GO:0052547	regulation of peptidase activity	BP
GO:0052548	regulation of endopeptidase activity	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060548	negative regulation of cell death	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0061013	regulation of mRNA catabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0065009	regulation of molecular function	BP
GO:0070390	transcription export complex 2	CC
GO:0070727	cellular macromolecule localization	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071025	RNA surveillance	BP
GO:0071027	nuclear RNA surveillance	BP
GO:0071028	nuclear mRNA surveillance	BP
GO:0071033	nuclear mRNA surveillance	BP
GO:0071166	ribonucleoprotein complex localization	BP
GO:0071310	cellular response to organic substance	BP
GO:0071369	cellular response to ethylene stimulus	BP
GO:0071426	obsolete ribonucleoprotein complex export from nucleus	BP
GO:0071427	obsolete mRNA-containing ribonucleoprotein complex export from nucleus	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090068	positive regulation of cell cycle process	BP
GO:0090231	regulation of spindle checkpoint	BP
GO:0090232	positive regulation of spindle checkpoint	BP
GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint	BP
GO:0090267	positive regulation of mitotic cell cycle spindle assembly checkpoint	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0099402	plant organ development	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901976	regulation of cell cycle checkpoint	BP
GO:1901978	positive regulation of cell cycle checkpoint	BP
GO:1901987	regulation of cell cycle phase transition	BP
GO:1901990	regulation of mitotic cell cycle phase transition	BP
GO:1902099	regulation of metaphase/anaphase transition of cell cycle	BP
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1903311	regulation of mRNA metabolic process	BP
GO:1903504	regulation of mitotic spindle checkpoint	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1905818	regulation of chromosome separation	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000116	regulation of cysteine-type endopeptidase activity	BP
GO:2000117	negative regulation of cysteine-type endopeptidase activity	BP
GO:2001141	regulation of RNA biosynthetic process	BP